海洋固氮菌和解磷菌的分离鉴定及发酵条件优化

【目的】从西沙喜盐草根际沉积物中分离纯化得到具有高效固氮能力及解磷能力的菌株。优化其发酵培养条件,研究其制备海洋微生物菌剂的可能性。【方法】从形态学特征、生理生化、16S rDNA及功能基因水平进行鉴定,通过乙炔还原法、钼锑抗显色法检测菌株的固氮酶活性和解磷能力,单因素法和响应面法优化其发酵培养条件,溶血试验和急性毒性实验鉴定菌株的安全性。【结果】结果表明,菌株AZ16属于星箭头菌(Sagittula stellate),革兰氏阴性菌,选择性固氮培养基中菌落呈黄圆形黏稠状,固氮酶活性达34.63 nmol C2H2/(mL·h),最适生长条件为:盐度25‰、pH 7.5、温度33°C、接种量5.0%;菌株XT37为海洋芽孢杆菌(Bacillus sp.),革兰氏阳性菌,选择性固氮培养基中菌落呈深黄色圆形褶皱,植酸酶活性达239.49μg/L,最适合生长条件为:盐度25‰、pH 6.7、温度28°C、接种量5.0%。溶血实验和急性毒性实验证明两株菌属实际无毒级别。【结论】两株菌具有高效的固氮解磷功能,以及抗高盐、强碱等环境的能力,安全无毒,因此有潜力应用于多功能混合微生物菌剂的研制。     

2008-2017年度微生物资源分类方向申请与资助情况

本文简要统计分析了2008至2017年度国家自然科学基金微生物学科在资源、分类和系统发育方向的项目申请、受理和资助情况。针对本方向项目资助与管理过程中的突出问题,对未来工作提出若干建议。     

The Role of Low-Molecular-Weight Organic Carbons in Facilitating the Mobilization and Biotransformation of As(V)/Fe(III) from a Realgar Tailing Mine Soil

Several low-molecular-weight organic carbon (LMWOC) compounds (acetate, propionate, butyrate, lactate, and glucose) were added to flooded arsenic-rich tailing mine soil to investigate their effect to the mobilization of As/Fe and potential shift of microbial community. A promoting effect to the mobilization and biotransformation of As(V)/Fe(III) in the soils resulting from the supplementation with LMWOCs substrate was indicated compared to the biotic microcosm amended with deionized water alone. During 38-day biotic incubation, more than 2100 μg/L of As(III) and 4.2 mg/L of Fe(II) levels were released from the soils amended with LMWOCs substrates, compared to the levels of As(III) and Fe(II) (less 35 μg/L and 1.82 mg/L) derived from the biotic supplementation with deionized water alone. PCR-DGGE indicated that several LMWOCs-responded bacteria were mostly related to Firmicutes and Proteobacteria. Moreover, a negligible impact on the abundance of Fe(III)-reducing family Geobacteraceae was indicated in the LMWOCs-amended soils. However, an increased abundance of sulfate-reducing bacteria but a decreased abundance of arsenate-respiring bacteria were indicated upon the soils supplemented with acetate alone, compared with other LMWOC amendments. DNA-stable isotope probing analysis demonstrated that the dual roles of acetate was not only served as an electron donor for biotransformation of As(V)/Fe(III) in soil, but also assimilated as a powerful energy source to promote the growth of sulfate-reducing bacteria. The findings suggest that there are specific bacteria that preferentially respond to the additions of LMWOC for controlling the biochemical cycle process of As/Fe in soils.     

Bucking the current trend in bioelectrochemical systems: a case for bioelectroanalytics

Turning wastewater directly into electricity is alluring, widespread use of microbial fuel cells (MFCs) to achieve this at industrial scale appears increasingly unlikely despite intense research efforts lasting over a decade. Such endeavors have not been futile, however, and game-changing discoveries have resulted from these well-intentioned, scientifically rigorous but ultimately frustrated attempts to resolve the Waste-Energy dichotomy. The appeal of MFCs is largely of conceptual elegance rather than financial competitiveness, based on the green ideal that bacteria can be turned into cost effective bio-batteries. This notion is founded on the solid principles of extracellular electron transfer (EET), where microbes use electrodes interchangeably with other electron acceptors to generate current as a direct proxy for microbial metabolism. We contend that a nuanced understanding of EET has been restricted by focusing on device performance when in fact this information could be more beneficially channeled into addressing analytical questions pertaining to the presence and activity of microorganisms across systems of environmental and medical import, i.e. bioelectroanalytics. We discuss here relevant literature detailing bioelectrochemical systems and contrast energy-centric conclusions with observations geared towards bioelectroanalytics. We explore the expanding possibilities of bioelectroanalytics enabled by advances in genetic techniques and rooted in the concept that microbial interactions with an electrode extend to more than just cells seeking alternative electron acceptors. Our intention is to highlight alternative directions in the field and encourage researchers to harness bioelectroanalytics to address wider societal problems, in addition to addressing climate change.     

Microbial consortia: a critical look at microalgae co-cultures for enhanced biomanufacturing

Monocultures have been the preferred production route in the bio-industry, where contamination has been a major bottleneck. In nature, microorganisms usually exist as part of organized communities and consortia, gaining benefits from co-habitation, keeping invaders at bay. There is increasing interest in the use of co-cultures to tackle contamination issues, and simultaneously increase productivity and product diversity. The feasibility of extending the natural phenomenon of co-habitation to the biomanufacturing industry in the form of co-cultures requires careful and systematic consideration of several aspects. This article will critically examine and review current work on microbial co-cultures, with the intent of examining the concept and proposing a design pipeline that can be developed in a biomanufacturing context.     

VOCs-mediated hormonal signaling and crosstalk with plant growth promoting microbes

In the natural environment, plants communicate with various microorganisms (pathogenic or beneficial) and exhibit differential responses. In recent years, research on microbial volatile compounds (MVCs) has revealed them to be simple, effective and efficient groups of compounds that modulate plant growth and developmental processes. They also interfere with the signaling process. Different MVCs have been shown to promote plant growth via improved photosynthesis rates, increased plant resistance to pathogens, activated phytohormone signaling pathways, or, in some cases, inhibit plant growth, leading to death. Regardless of these exhibited roles, the molecules responsible, the underlying mechanisms, and induced specific metabolic/molecular changes are not fully understood. Here, we review current knowledge on the effects of MVCs on plants, with particular emphasis on their modulation of the salicylic acid, jasmonic acid/ethylene, and auxin signaling pathways. Additionally, opportunities for further research and potential practical applications presented.     

Increased CO2 fluxes from a sandy Cambisol under agricultural use in the Wendland region,Northern Germany,three years after biochar substrates application

In recent years, biochar has been discussed as an opportunity for carbon sequestration in arable soils. Field experiments under realistic conditions investigating the CO₂ emission from soil after biochar combined with fertilizer additions are scarce. Therefore, we investigated the CO₂ emission and its ¹³C signature after addition of compost, biogas digestate (originating from C4 feedstock) and mineral fertilizer with and without biochar (0, 3, 10, 40 Mg biochar/ha) to a sandy Cambisol in Northern Germany. Biomass residues were pyrolized at ~650°C to obtain biochar with C3 signature. Gas samples were taken biweekly during the growing season using static chambers three years after biochar substrate addition. The CO₂ concentration and its δ¹³C isotope signature were measured using a gas chromatograph coupled to an isotope ratio mass spectrometer. Results showed increased CO₂ emission (30%–60%) when high biochar amount (40 Mg/ha) was applied three years ago together with mineral fertilizer and biogas digestate. On average, 59% of the emitted CO₂ had a C3 signature (thus, deriving from biochar and/or soil organic matter), independent of the amount of biochar added. In addition, our results clearly demonstrated that only a small amount of released CO₂ derived from biochar. The results of this field experiment suggest that biochar most likely stimulates microbial activity in soil leading to increased CO₂ emissions derived from soil organic matter and fertilizers mineralization rather than from biochar. Nevertheless, compared to the amount of carbon added by biochar, additional CO₂ emission is marginal corroborating the C sequestration potential of biochar.